kingdom

In biological taxonomy, kingdom and/or regnum is a taxonomic rank in either (historically) the highest rank, or (in the new three-domain system) the rank below domain. Each kingdom is divided into smaller groups called phyla (or in some contexts these are called "divisions"). Currently, many textbooks from the United States use a system of six kingdoms (Animalia, Plantae, Fungi, Protista, Archaea, Bacteria) while British and Australian textbooks may describe five kingdoms (Animalia, Plantae, Fungi, Protista, and Prokaryota or Monera). The classifications of taxonomy are life, domain, kingdom, phylum, class, order, family, genus, and species.

Carolus Linnaeus distinguished two kingdoms of living things: Animalia for animals and Vegetabilia for plants (Linnaeus also included minerals, placing them in a third kingdom, Mineralia). Linnaeus divided each kingdom into classes, later grouped into phyla for animals and divisions for plants. It gradually became apparent how important the prokaryote/eukaryote distinction is, and Stanier and van Niel popularized Edouard Chatton's proposal in the 1960s.[1]
Contents
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* 1 Five kingdoms
* 2 Six kingdoms
* 3 Recent advances
* 4 Summary
* 5 References
* 6 See also
* 7 External links

[edit] Five kingdoms
It has been suggested that this section be split into a new article entitled Five kingdom system. (Discuss)

Robert Whittaker recognized an additional kingdom for the Fungi. The resulting five-kingdom system, proposed in 1969, has become a popular standard and with some refinement is still used in many works, or forms the basis for newer multi-kingdom systems. It is based mainly on differences in nutrition; his Plantae were mostly multicellular autotrophs, his Animalia multicellular heterotrophs, and his Fungi multicellular saprotrophs. The remaining two kingdoms, Protista and Monera, included unicellular and simple cellular colonies.[2]
[edit] Six kingdoms
It has been suggested that this section be split into a new article entitled Six kingdom system. (Discuss)

In the years around 1980, there was an emphasis on phylogeny and redefining the kingdoms to be monophyletic groups, groups made up of relatively closely related organisms. The Animalia, Plantae, and Fungi were generally reduced to core groups of closely related forms, and the others placed into the Protista. Based on RNA studies, Carl Woese divided the prokaryotes (Kingdom Monera) into two kingdoms, called Eubacteria and Archaebacteria. Carl Woese attempted to establish a Three Primary Kingdom (or Urkingdom) system in which Plants, Animals, Protista, and Fungi were lumped into one primary kingdom of all eukaryotes. The Eubacteria and Archaebacteria made up the other two urkingdoms. The initial use of "six Kingdom systems" represents a blending of the classic Five Kingdom system and Woese's Three Kingdom system. Such six Kingdom systems have become standard in many works.[3]

A variety of new eukaryotic kingdoms were also proposed, but most were quickly invalidated, ranked down to phyla or classes, or abandoned. The only one which is still in common use is the kingdom Chromista proposed by Cavalier-Smith, including organisms such as kelp, diatoms, and water moulds. Thus the eukaryotes are divided into three primarily heterotrophic groups, the Animalia, Fungi, and Protozoa, and two primarily photosynthetic groups, the Plantae (including red and green algae) and Chromista. However, it has not become widely used because of uncertainty over the monophyly of the latter two kingdoms.

Woese stresses genetic similarity over outward appearances and behaviour, relying on comparisons of ribosomal RNA genes at the molecular level to sort out classification categories. A plant does not look like an animal, but at the cellular level, both groups are eukaryotes, having similar subcellular organization, including cell nuclei, which the Eubacteria and Archaebacteria do not have. More importantly, plants, animals, fungi, and protists are more similar to each other in their genetic makeup at the molecular level, based on RNA studies, than they are to either the Eubacteria or Archaebacteria. Woese also found that all of the eukaryotes, lumped together as one group, are more closely related, genetically, to the Archaebacteria than they are to the Eubacteria. This means that the Eubacteria and Archaebacteria are separate groups even when compared to the eukaryotes. So, Woese established the Three-domain system, clarifying that all the Eukaryotes are more closely genetically related compared to their genetic relationship to either the bacteria or the archaebacteria, without having to replace the "six kingdom systems" with a three kingdom system. The Three Domain system is a "six kingdom system" that unites the eukaryotic kingdoms into the Eukarya Domain based on their relative genetic similarity when compared to the Bacteria Domain and the Archaea Domain. Woese also recognized that the Protista Kingdom is not a monophyletic group and might be further divided at the level of Kingdom. Others have divided the Protista Kingdom into the Protozoa and the Chromista, for instance.

[edit] Recent advances

Classification is an ongoing area of research and discussion. As new findings and technologies become available they allow the refinement of the model. For example, gene sequencing techniques allow the comparison of the genome of different groups (Phylogenomics). A study published in 2007 by Fabien Burki, et al.[4] proposes four high level groups of eukaryotes based on phylogenomics research.

1. Plantae (green and red algae, and plants)
2. Opisthokonts (amoebas, fungi, and animals)
3. Excavata (free-living and parasitic protists)
4. SAR (acronym for Stramenopiles, Alveolates, and Rhizaria–the names of some of its members. Burki found that the previously split groups Rhizaria and Chromalveolates were more similar in 123 common genes than once thought.)

Recent phylogenetic studies suggest there are anywhere from 18 to over 30 different kingdoms that have been discovered.

[edit] Summary
Linnaeus[5]
(1735)
2 kingdoms Haeckel[6]
(1866)
3 kingdoms Chatton[7]
(1925)
2 groups Copeland[8]
(1938)
4 kingdoms Whittaker[2]

(1969)
5 kingdoms
Woese [9][10]
(1977,1990)
3 domains
Animalia Animalia Eukaryote Animalia Animalia Eukarya
Vegetabilia Plantae Plantae Plantae
Protoctista Fungi
Protista
(not treated) Protista
Procaryote Monera Monera Archaea
Bacteria

Note that the equivalences in this table are not perfect. e.g. Haeckell placed the red algae (Haeckell's Florideae; modern Florideophyceae) and blue-green algae (Haeckell's Archephyta; modern Cyanobacteria) in his Plantae.

In 1998, Cavalier-Smith[11] proposed that Protista should be divided into 2 new kingdoms: Chromista the phylogenetic group of golden-brown algae that includes those algae whose chloroplasts contain chlorophylls a and c, as well as various colorless forms that are closely related to them, and Protozoa, the kingdom of protozoans[12]. This proposal has not been widely-adopted, although the question of the relationships between different domains of life remains controversial.[13]
Empires Kingdoms
Prokaryota Bacteria
Eukaryota Animalia Plantae Fungi Chromista Protozoa

[edit] References

1. ^ R. Y. Stanier and C. B. van Niel (1962). "The concept of a bacterium". Arch. Microbiol. 42: 17–35.
2. ^ a b Whittaker RH (January 1969). "New concepts of kingdoms or organisms. Evolutionary relations are better represented by new classifications than by the traditional two kingdoms". Science (journal) 163 (863): 150–60. doi:10.1126/science.163.3863.150. PMID 5762760.
3. ^ Balch WE, Magrum LJ, Fox GE, Wolfe RS, Woese CR (August 1977). "An ancient divergence among the bacteria". J. Mol. Evol. 9 (4): 305–11. doi:10.1007/BF01796092. PMID 408502.
4. ^ Burki F, Shalchian-Tabrizi K, Minge M, et al. (2007). "Phylogenomics reshuffles the eukaryotic supergroups". PLoS ONE 2 (8): e790. doi:10.1371/journal.pone.0000790. PMID 17726520.
5. ^ C. Linnaeus (1735). Systemae Naturae, sive regna tria naturae, systematics proposita per classes, ordines, genera & species.
6. ^ Haeckel (1866). Generelle Morphologie der Organismen. Reimer, Berlin..
7. ^ E. Chatton (1925). "Pansporella perplexa. Réflexions sur la biologie et la phylogénie des protozoaires". Ann. Sci. Nat. Zool 10-VII: 1–84.
8. ^ H. Copeland (1938). "The kingdoms of organisms". Quarterly review of biology 13: 383–420. doi:10.1086/394568.
9. ^ Woese CR, Fox GE (November 1977). "Phylogenetic structure of the prokaryotic domain: the primary kingdoms". Proc. Natl. Acad. Sci. U.S.A. 74 (11): 5088–90. PMID 270744.
10. ^ Woese CR, Kandler O, Wheelis ML (June 1990). "Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya". Proc. Natl. Acad. Sci. U.S.A. 87 (12): 4576–9. PMID 2112744.
11. ^ Cavalier-Smith T (August 1998). "A revised six-kingdom system of life". Biol Rev Camb Philos Soc 73 (3): 203–66. doi:10.1111/j.1469-185X.1998.tb00030.x. PMID 9809012.
12. ^ T. Cavalier-Smith (2006). "Protozoa: the most abundant predators on earth". Microbiology Today (pdf here): 166–167.
13. ^ Walsh DA, Doolittle WF (April 2005). "The real 'domains' of life". Curr. Biol. 15 (7): R237–40. doi:10.1016/j.cub.2005.03.034. PMID 15823519